Publications
2026
Piazzese, Laura; Ramminger, Elisa; Ramalhosa, Patrício; Schäfer, Susanne; Canning-Clode, João; Lenz, Mark
Artificial light at night shapes marine early hard-bottom communities in Madeira Island, NE Atlantic Journal Article
In: Marine Pollution Bulletin, vol. 222, pp. 118886, 2026, ISSN: 0025-326X.
@article{PIAZZESE2026118886,
title = {Artificial light at night shapes marine early hard-bottom communities in Madeira Island, NE Atlantic},
author = {Laura Piazzese and Elisa Ramminger and Patrício Ramalhosa and Susanne Schäfer and João Canning-Clode and Mark Lenz},
url = {https://www.sciencedirect.com/science/article/pii/S0025326X25013621},
doi = {https://doi.org/10.1016/j.marpolbul.2025.118886},
issn = {0025-326X},
year = {2026},
date = {2026-10-31},
urldate = {2026-01-01},
journal = {Marine Pollution Bulletin},
volume = {222},
pages = {118886},
abstract = {Artificial light at night (ALAN) is increasingly recognised as a pollutant that modifies natural light conditions and negatively impacts terrestrial and aquatic ecosystems. Marine hard-bottom communities are important components of coastal ecosystems, supporting diverse sessile organisms and early successional processes that can reveal community-level responses to environmental changes. This study investigated the influence of ALAN on early successional marine hard-bottom communities in a field experiment conducted in Madeira, Portugal. Simulated outdoor LED lighting systems were used to expose submerged PVC settlement panels to white and yellow light in order to assess their effects on the establishing communities over a three-month period. Light of both colours significantly altered community composition and the abundances of colonisers such as the hydrozoan Pennaria disticha and the red alga Polysiphonia sertularioides in comparison to assemblages that simultaneously established on non-illuminated surfaces. In general, ALAN-exposed communities exhibited a higher species richness but a lower evenness compared to non-exposed assemblages. Our results reveal the potential of ALAN to alter the biodiversity and structure of shallow-water, benthic communities and underscore the need for further research to assess the consequences of anthropogenic light emissions for coastal marine ecosystems.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bernal-Ibáñez, Alejandro; Boada, Jordi; Cacabelos, Eva; Florido-Capilla, Marta; Triay-Portella, Raül; Ramalhosa, Patrício; Silva, Rodrigo P.; Canning-Clode, João; Gestoso, Ignacio
Concomitant effects of algae invasion and sea urchin mass mortality drive the shift from barrens to turf grounds Journal Article
In: Marine Environmental Research, vol. 213, pp. 107646, 2026, ISSN: 0141-1136.
@article{BERNALIBANEZ2026107646,
title = {Concomitant effects of algae invasion and sea urchin mass mortality drive the shift from barrens to turf grounds},
author = {Alejandro Bernal-Ibáñez and Jordi Boada and Eva Cacabelos and Marta Florido-Capilla and Raül Triay-Portella and Patrício Ramalhosa and Rodrigo P. Silva and João Canning-Clode and Ignacio Gestoso},
url = {https://www.sciencedirect.com/science/article/pii/S0141113625007032},
doi = {https://doi.org/10.1016/j.marenvres.2025.107646},
issn = {0141-1136},
year = {2026},
date = {2026-10-25},
urldate = {2026-01-01},
journal = {Marine Environmental Research},
volume = {213},
pages = {107646},
abstract = {Ecosystem regime shifts have received significant attention both from the perspective of the processes governing them and the consequences they entail. Most of the time, the focus is placed on habitat degradation with major transitions happening from healthy habitat states to depauperate conditions. In marine systems, well-known examples include coral reef collapse into macroalgal-dominated habitats and the conversion of kelp forests into sea urchin barrens. In Madeira Island (Macaronesia. NE Atlantic Ocean), the current invasion of the brown macroalgae Rugulopteryx okamurae poses a major threat to native coastal communities with major socioeconomic implications. This species was first detected in the archipelago of Madeira in December 2021 and has since been expanding along the coast of Madeira Island. Later in 2022, a mass mortality event (MME) of the main grazer species in the region, the sea urchin Diadema africanum, was detected. Here, we investigate the direct effects of the synchrony of these two events in time on a major regime shift in the coastal rocky systems along the southern coast of Madeira Island. Benthic surveys were conducted at four sites and two depths (5 m and 15 m) during two years (2021 and 2023), covering both spring and autumn. Results revealed major ecological changes: D. africanum densities dropped to zero, and previously barren areas transitioned into turf- and erect-algae-dominated habitats. including widespread proliferation of R. okamurae. At two sites, R. okamurae became the dominant species across both depths. Species richness and Shannon diversity increased at 15 m in 2023, while patterns at 5 m varied among sites. Our findings highlight the importance of temporal synchrony between ecological disturbances—in this case, invasion and grazer collapse—in driving regime shifts. While the long-term stability of this new state remains uncertain, it adds to growing evidence that algal turfs can act as alternative stable states to both kelp forests and barrens. Given the expected continued spread of R. okamurae in Madeira and across the NE Atlantic and Mediterranean, understanding the mechanisms behind its establishment and ecological impact is essential. Although this shift increased local biodiversitym, it does not signify the recovery of the original marine forests that historically characterized Madeira's reefs.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kako, Shin’ichiro; Kataoka, Tomoya; Matsuoka, Daisuke; etc,; Monteiro, João Gama; Topouzelis, Konstantinos; Isobe, Atsuhiko
Remote sensing and image analysis of macro-plastic litter: A review Journal Article
In: Marine Pollution Bulletin, vol. 222, pp. 118630, 2026, ISSN: 0025-326X.
@article{KAKO2026118630,
title = {Remote sensing and image analysis of macro-plastic litter: A review},
author = {Shin’ichiro Kako and Tomoya Kataoka and Daisuke Matsuoka and etc and João Gama Monteiro and Konstantinos Topouzelis and Atsuhiko Isobe},
url = {https://www.sciencedirect.com/science/article/pii/S0025326X25011063},
doi = {https://doi.org/10.1016/j.marpolbul.2025.118630},
issn = {0025-326X},
year = {2026},
date = {2026-09-09},
urldate = {2026-01-01},
journal = {Marine Pollution Bulletin},
volume = {222},
pages = {118630},
abstract = {Effective reduction of oceanic plastic pollution requires scalable and objective monitoring methods that go beyond traditional human-based surveys. This review synthesizes recent advances in remote sensing and AI-driven image analysis for detecting macro-plastic litter. Peer-reviewed studies published up to 2024 were systematically selected from the Scopus database, focusing on applications of remote sensing platforms including webcams, drones, balloons, aircraft, and satellites for monitoring plastic litter in coastal, riverine, and other aquatic environments. Quantification methods ranged from manual annotation to deep learning-based models. Although machine learning has been increasingly adopted since around 2020, manual screening and rule-based approaches remain prevalent, reflecting the complexity of litter types and shapes. The review revealed considerable variability in quantification metrics—such as litter-covered area, volume, weight, and item count per unit area—which complicates cross-study comparisons and data harmonization. While remote sensing enhances spatial coverage, consistency, and repeatability, it faces persistent challenges, including environmental interference, limited resolution, and inconsistent protocols. Our findings highlight the urgent need for methodological standardization and harmonization of quantification units across platforms and geographic regions. Among available metrics, litter-covered area and item count per unit area are most suitable for cross-platform comparison. Continued development and integration of such technologies hold strong potential to facilitate science-based policymaking and long-term monitoring of plastic transport from land to ocean.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Brown, Elliot J; van der Reijden, Karin Johanna; Castro, Nuno; etc,; Wakeford, Robert C
The effects of marine protected area designation and associated restrictions on fisheries in EU MPAs Journal Article
In: ICES Journal of Marine Science, vol. 83, no. 5, pp. fsag058, 2026, ISSN: 1054-3139.
@article{10.1093/icesjms/fsag058,
title = {The effects of marine protected area designation and associated restrictions on fisheries in EU MPAs},
author = {Elliot J Brown and Karin Johanna van der Reijden and Nuno Castro and etc and Robert C Wakeford},
url = {https://doi.org/10.1093/icesjms/fsag058},
doi = {10.1093/icesjms/fsag058},
issn = {1054-3139},
year = {2026},
date = {2026-05-09},
urldate = {2026-01-01},
journal = {ICES Journal of Marine Science},
volume = {83},
number = {5},
pages = {fsag058},
abstract = {Marine protected areas (MPAs) are central to European Union (EU) marine policy, yet their effectiveness remains contested, especially with regard to ongoing fishing activities. Using officially reported fisheries effort data from vessel monitoring systems and logbooks, we analysed 781 MPAs across four ICES ecoregions to quantify fishing activity and assess responses to MPA designation and the imposition of fisheries restrictions. We aggregated effort by gear type, i.e. mobile bottom-contacting gears (MBCG) and passive or pelagic gears (PPG). We applied post-hoc before-after-control-impact (BACI) analyses using generalized linear mixed models. A total of 60% of MPAs were fished after designation, including 44% with MBCG and 55% with PPG, with regional variation from 40% in the Celtic Seas to 89% in the Bay of Biscay and Iberian Coast. MPA designation alone did not significantly change fishing effort for any gear category. The imposition of fisheries restrictions reduced effort across all gears, with declines of 30% in MPAs compared to 13% in adjacent controls. Similar reductions were observed for MBCG (31% vs 15%) and PPG (26% vs 9%). MPAs with benthic conservation objectives experienced reductions in MBCG effort (25% vs 9%), but no significant changes in PPG nor total effort. These findings indicate that designation without accompanying restrictions does not alter fishing behaviour. Contrastingly, fishing restrictions can reduce effort in MPAs, albeit with strong site-level variability, and depending on the type of restrictions that are put in place. Our results highlight the need to set clear conservation objectives when designating MPAs and to develop follow-on management measures tailored to these objectives. By leveraging official effort data and BACI designs at a regional scale, this study provides robust evidence to inform policy discussions on the effects of MPAs as fisheries management tools in EU waters.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Lavrador, Ana S.; Afonso, Inês; Chainho, Paula; etc,; Parretti, Paola; Ramalhosa, Patrício; etc,; Duarte, Sofia
Tracking marine invaders in Portuguese marinas by DNA metabarcoding from coast to archipelagos Journal Article
In: Water Biology and Security, pp. 100635, 2026, ISSN: 2772-7351.
@article{LAVRADOR2026100635,
title = {Tracking marine invaders in Portuguese marinas by DNA metabarcoding from coast to archipelagos},
author = {Ana S. Lavrador and Inês Afonso and Paula Chainho and etc and Paola Parretti and Patrício Ramalhosa and etc and Sofia Duarte},
url = {https://www.sciencedirect.com/science/article/pii/S2772735126000892},
doi = {https://doi.org/10.1016/j.watbs.2026.100635},
issn = {2772-7351},
year = {2026},
date = {2026-05-05},
urldate = {2026-01-01},
journal = {Water Biology and Security},
pages = {100635},
abstract = {Marine non-indigenous species (NIS), introduced primarily through shipping in marinas and ports, pose significant threats to coastal biodiversity and ecosystem functioning, requiring effective management strategies, especially for monitoring aimed at early detection. This study aimed to capture a comprehensive snapshot of the geographic variation of marine invertebrate assemblages and NIS occurrence, across 10 recreational marinas in Portugal (6 on the mainland - Viana do Castelo, Porto, Aveiro (2 marinas), and Lisbon (2 marinas) - and 2 in each archipelago, Madeira and the Azores). In each marina, hard substrates, zooplankton, and water samples (for eDNA) were collected in triplicate during summer for metabarcoding profiling, yielding 111 samples. Using Illumina MiSeq sequencing of the mitochondrial cytochrome c oxidase subunit I (COI) gene (313 bp) and the V4 region of the small subunit 18S rRNA gene (18S, approximately 400 bp), we detected 641 species from 21 phyla, 39 of which were NIS (7 phyla). Less than 1% of the species and 5% of NIS were detected in all marinas. The Azores had the highest numbers of both exclusive native species (97) and NIS (6). In contrast, Aveiro had the lowest number of exclusive native species (38), while the lowest numbers of exclusive NIS were observed in both the North and Aveiro (1 each). Detection success also varied among sample types: zooplankton samples recovered the highest proportion of total species (64%), whereas hard substrates in the islands and water samples in mainland Portugal recovered the highest proportions of NIS. A Principal Coordinate Analysis indicated a distinct separation among communities forming three main groups: (1) Viana do Castelo, Porto, and Aveiro; (2) Lisbon; and (3) Madeira and the Azores. Similarity between these groups is negatively correlated with geographic distance and overlaps with ecoregions previously identified within Lusitania. In the Azores, 9 NIS were recorded for the first time, and one in Madeira. We also recorded a considerable number of potential range expansions of NIS, predominantly along the mainland coast, in both North (N), South (S) or S-N directions, which suggests a high potential for DNA metabarcoding to be included in future national marine biomonitoring campaigns.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Schourup-Kristensen, Vibe; Broadus, Lindsey Jo; Larsen, Janus; etc,; Kaufmann, Manfred; etc,; Mohn, Christian
Great Meteor Seamount Circulation Revisited: Insights Into Cold-Water Coral Habitat Potential Journal Article
In: Journal of Geophysical Research: Oceans, vol. 131, no. 5, pp. e2025JC023436, 2026, (e2025JC023436 2025JC023436).
@article{https://doi.org/10.1029/2025JC023436,
title = {Great Meteor Seamount Circulation Revisited: Insights Into Cold-Water Coral Habitat Potential},
author = {Vibe Schourup-Kristensen and Lindsey Jo Broadus and Janus Larsen and etc and Manfred Kaufmann and etc and Christian Mohn},
url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2025JC023436},
doi = {https://doi.org/10.1029/2025JC023436},
year = {2026},
date = {2026-05-03},
urldate = {2026-01-01},
journal = {Journal of Geophysical Research: Oceans},
volume = {131},
number = {5},
pages = {e2025JC023436},
abstract = {Abstract Seamounts play a crucial role in shaping deep-sea ecosystem structure, influencing ocean circulation, enhancing biological productivity, and supporting diverse marine life. The Great Meteor Seamount (GMS), is the largest seamount in the North Atlantic and a key ecological feature in the regional network of the Protected Areas of the Azores Archipelago, but remains poorly understood in terms of small-scale physical-biological interactions. Using a new high-resolution setup of the FlexSem hydrodynamic model, we analyze ocean circulation and water mass properties around GMS over a 9-month period. The results reveal a persistent anticyclonic re-circulation along the upper seamount slopes and doming of isopycnals above the summit. Variations in density and temperature drive two distinct circulation and mixing regimes: A cold, dense period with bottom-intensified Taylor cap circulation and strong vertical coupling, and a warm, stratified period with enhanced stratification and reduced vertical mixing. The high resolution of the model makes it possible to compare habitat-suitability maps for benthic filter-feeding organisms with maps of internal wave slope characteristics, revealing a key role of internal wave induced mixing in supporting cold-water corals and other benthic filter-feeding communities. The study highlights the significance of biophysical interactions at the seamount and emphasizes the need for further research into small-scale processes that support biological growth.},
note = {e2025JC023436 2025JC023436},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Chebaane, Sahar; Aylagas, Eva; Sempere-Valverde, Juan; etc,; Carvalho, Susana
In: Scientific Reports, vol. 16, 2026.
@article{article_67,
title = {Site-specific variation and non-indigenous species detection in Arabian Gulf biofouling communities using DNA metabarcoding and photographic surveys},
author = {Sahar Chebaane and Eva Aylagas and Juan Sempere-Valverde and etc and Susana Carvalho},
doi = {10.1038/s41598-026-41227-6},
year = {2026},
date = {2026-04-28},
urldate = {2026-01-01},
journal = {Scientific Reports},
volume = {16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Meirelles, Bruno; Boteler, Ben; Borja, Angel; etc,; Parretti, Paola; etc,; Lusseau, David
Systemic pathways to desirable futures: options for the marine ecosystem-based management of wicked problems Journal Article
In: npj Climate Action, vol. 5, 2026.
@article{article_66,
title = {Systemic pathways to desirable futures: options for the marine ecosystem-based management of wicked problems},
author = {Bruno Meirelles and Ben Boteler and Angel Borja and etc and Paola Parretti and etc and David Lusseau},
doi = {10.1038/s44168-026-00356-4},
year = {2026},
date = {2026-04-23},
urldate = {2026-01-01},
journal = {npj Climate Action},
volume = {5},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Janiak, Dean; Carvalho, Susana; Cottrell, Dylan; etc,; Sempere-Valverde, Juan; Thiel, Martin; Ramalhosa, Patrício; Vieira, Edson
Marine biofouling communities: a global synthesis of research trends, knowledge gaps, and future directions Journal Article
In: Marine Ecology Progress Series, 2026.
@article{article_65,
title = {Marine biofouling communities: a global synthesis of research trends, knowledge gaps, and future directions},
author = {Dean Janiak and Susana Carvalho and Dylan Cottrell and etc and Juan Sempere-Valverde and Martin Thiel and Patrício Ramalhosa and Edson Vieira},
doi = {10.3354/meps15160},
year = {2026},
date = {2026-04-15},
urldate = {2026-01-01},
journal = {Marine Ecology Progress Series},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Alves, Décio; Radeta, Marko; Mendonça, Fabio; Pereira, Lucas; Morgado-Dias, F.
A low-latency deep learning framework for volcanic ash cloud nowcasting using geostationary satellite imagery Journal Article
In: Scientific Reports, vol. 16, 2026.
@article{article_64,
title = {A low-latency deep learning framework for volcanic ash cloud nowcasting using geostationary satellite imagery},
author = {Décio Alves and Marko Radeta and Fabio Mendonça and Lucas Pereira and F. Morgado-Dias},
doi = {10.1038/s41598-026-42230-7},
year = {2026},
date = {2026-03-22},
urldate = {2026-01-01},
journal = {Scientific Reports},
volume = {16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Redaelli, Laura; Janik, Vincent; Alves, Filipe; Oswald, Julie; Fernandez, Marc; Hamard, Eliette; Sayigh, Laela; Santos, Manuel; Dinis, Ana; Caruso, Francesco
Identification and classification of repeated whistle types from free-ranging rough-toothed dolphins (Steno bredanensis) Journal Article
In: Scientific Reports, vol. 16, 2026.
@article{article_68,
title = {Identification and classification of repeated whistle types from free-ranging rough-toothed dolphins (Steno bredanensis)},
author = {Laura Redaelli and Vincent Janik and Filipe Alves and Julie Oswald and Marc Fernandez and Eliette Hamard and Laela Sayigh and Manuel Santos and Ana Dinis and Francesco Caruso},
doi = {10.1038/s41598-026-44853-2},
year = {2026},
date = {2026-03-20},
urldate = {2026-01-01},
journal = {Scientific Reports},
volume = {16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Martins, Miguel; Fernandez, Marc; Marçalo, Ana; Oliveira, Nuno; Marques, Tiago
Seasonal and Interannual Variation of Common Dolphin, Delphinus delphis, Density in Portuguese Waters Journal Article
In: Marine Mammal Science, vol. 42, 2026.
@article{article_63,
title = {Seasonal and Interannual Variation of Common Dolphin, Delphinus delphis, Density in Portuguese Waters},
author = {Miguel Martins and Marc Fernandez and Ana Marçalo and Nuno Oliveira and Tiago Marques},
doi = {10.1111/mms.70160},
year = {2026},
date = {2026-03-16},
urldate = {2026-01-01},
journal = {Marine Mammal Science},
volume = {42},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Hamard, Eliette; Fernandez, Marc; Ferreira, Rita; Sambolino, Annalisa; Dinis, Ana; Krakauer, Anja Badenas; Alves, Filipe
Natural markings and population parameters of Blainville’s beaked whales in Madeira Island Journal Article
In: Regional Studies in Marine Science, vol. 96, pp. 104878, 2026, ISSN: 2352-4855.
@article{HAMARD2026104878,
title = {Natural markings and population parameters of Blainville’s beaked whales in Madeira Island},
author = {Eliette Hamard and Marc Fernandez and Rita Ferreira and Annalisa Sambolino and Ana Dinis and Anja Badenas Krakauer and Filipe Alves},
url = {https://www.sciencedirect.com/science/article/pii/S2352485526001337},
doi = {https://doi.org/10.1016/j.rsma.2026.104878},
issn = {2352-4855},
year = {2026},
date = {2026-03-16},
urldate = {2026-01-01},
journal = {Regional Studies in Marine Science},
volume = {96},
pages = {104878},
abstract = {Population parameters have been studied for only five out of 24 beaked whale species in limited locations. This study provides novel knowledge on the natural markings and population parameters of Blainville’s beaked whales (Mesoplodon densirostris). Using photographic-identification data from adults and subadults of both sexes in Madeira Island (Eastern North Atlantic, 2015–2020), we estimated abundance and survival using capture-recapture models, the Robust Design (RD) and the POPAN. We calculated the proportion of marked individuals (i.e., at least slightly distinctive) as 0.88, with new marks appearing every 0.4 years (range = 0.1–0.7). Annual abundance estimates from both models were similar and showed no trend. The corrected annual abundance estimates from the POPAN best-fitting model ranged from 42 whales (95% CI = 39–46 in 2016, and 95% CI = 39–48 in 2019) to 61 (95% CI = 51–72 in 2015). The POPAN model estimated a corrected super-population of 112 individuals (95% CI = 99–134) between 2015 and 2020. Survival rates of 0.98 (95% CI = 0.83–1.0) and 0.99 (95% CI = 0.97–1.00) were estimated (excluding transients) from the RD and POPAN models, respectively, which are similar to other regions. Despite potential caveats discussed in our analysis, these plausible estimates for a relatively small population should be considered in conservation and management strategies, highlighting the need to monitor the potential impact of local human activities.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ferreira, Verónica; Serra, Sónia R. Q.; Calapez, Ana Raquel; etc,; Canning-Clode, João; Ramalhosa, Patrício; Álvarez, Soledad; etc,; Feio, Maria João
Moderators of Organic Matter Decomposition in Portuguese Streams: A Field Study and Literature Review Journal Article
In: Freshwater Biology, vol. 71, no. 2, pp. e70177, 2026, (e70177 3272692).
@article{https://doi.org/10.1111/fwb.70177,
title = {Moderators of Organic Matter Decomposition in Portuguese Streams: A Field Study and Literature Review},
author = {Verónica Ferreira and Sónia R. Q. Serra and Ana Raquel Calapez and etc and João Canning-Clode and Patrício Ramalhosa and Soledad Álvarez and etc and Maria João Feio},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fwb.70177},
doi = {https://doi.org/10.1111/fwb.70177},
year = {2026},
date = {2026-02-20},
urldate = {2026-02-20},
journal = {Freshwater Biology},
volume = {71},
number = {2},
pages = {e70177},
abstract = {ABSTRACT Organic matter decomposition is a fundamental ecosystem process in streams, which have a large aquatic-terrestrial interface. The sensitivity of organic matter decomposition to changes in environmental conditions promoted by human activities is relatively well understood at large and local scales. In contrast, less is known about the natural variability of organic matter decomposition along natural gradients, especially at intermediate spatial scales. This gap undermines the use of organic matter decomposition as a tool to assess stream functional integrity in biomonitoring programmes. This study aimed at identifying the main moderators of organic matter decomposition under undisturbed conditions to establish natural baseline variation in organic matter decomposition rates in Portuguese streams. A field study was carried out to assess organic matter decomposition rates in 37 least-disturbed streams distributed throughout continental Portugal and Madeira Island. This study addressed gaps in empirical research by using poplar organic matter, including wood, and undertaking the incubation in spring, while previous studies were carried out preferably in autumn/winter and used alder and oak leaf litter. A systematic literature review was also conducted to compile organic matter decomposition rates from least-disturbed streams across continental Portugal and the Azores archipelago. Organic matter type (leaves or wood), shredder access (fine-mesh or coarse-mesh bags), season (autumn/winter or spring/summer), water nitrate concentration, the presence of exotic vegetation, distance to the source, and percentage shade emerged as main moderators of organic matter decomposition in the field study. Organic matter type and identity (genus), shredder access, season, stream type (national Water Framework Directive typologies), hydrological regime (permanent or intermittent), water temperature, conductivity, and soluble reactive phosphorus concentrations were also important moderators of organic matter decomposition for the compilation of the field data and literature review data. There was considerable variation in organic matter decomposition across least-disturbed streams, reflecting differences in organic matter type and identity, shredder access, season, and environmental conditions. Therefore, for organic matter decomposition to be used as a tool to assess stream functional integrity, it is necessary to standardise the protocol by selecting specific organic matter types and species, mesh types, and incubation seasons to minimise variation caused by these factors. Choosing stream typologies relevant for the decomposition process (e.g., as outlined in the Water Framework Directive), along with identifying reference decomposition ranges for each typology, may facilitate the assessment of deviations in stream functioning from reference conditions.},
note = {e70177 3272692},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Outinen, Okko; Stæhr, Peter A. U.; Ribeiro, Romeu S.; etc,; Canning-Clode, João; Parretti, Paola; Ramalhosa, Patrício; Castro, Nuno
The haunting challenge of the trends and pathway assessments on newly introduced non-indigenous species in European seas Journal Article
In: Marine Pollution Bulletin, vol. 226, pp. 119407, 2026, ISSN: 0025-326X.
@article{OUTINEN2026119407,
title = {The haunting challenge of the trends and pathway assessments on newly introduced non-indigenous species in European seas},
author = {Okko Outinen and Peter A. U. Stæhr and Romeu S. Ribeiro and etc and João Canning-Clode and Paola Parretti and Patrício Ramalhosa and Nuno Castro},
url = {https://www.sciencedirect.com/science/article/pii/S0025326X26001943},
doi = {https://doi.org/10.1016/j.marpolbul.2026.119407},
issn = {0025-326X},
year = {2026},
date = {2026-02-12},
urldate = {2026-01-01},
journal = {Marine Pollution Bulletin},
volume = {226},
pages = {119407},
abstract = {The spread of aquatic non-indigenous species (NIS) is recognised as a major threat to the recipient regions ecosystems. The present study reviewed all NIS that have been introduced to the marine waters of the European Union (EU) until 2021, and their introduction pathways. Further, the study statistically analysed temporal trends in new NIS introductions and addressed uncertainties in relation to transporting pathways. Time-series analyses indicated that the observed trends in new NIS introductions have followed smoothly increasing trajectories for the entire study area, Mediterranean Sea, North-East Atlantic Ocean, and the Baltic Sea, whereas abrupt increase was detected for the Black Sea. It is noteworthy that the increasing trends started to slow down at the end of 2010s. Strongly increased research interest towards marine invasions since the early 2000s, and new environmental policies likely affected the observed trends. Future updates will be key to assessing whether this slowdown is truly a persisting trend or only an anomaly in the long term. The pathway assessment suffered from notable uncertainties, as the assigned confidence levels for pathways were low or unassigned for a large proportion of the introduced NIS in all study regions. Transport by shipping vectors was assigned as the most common pathway (51%) for new NIS introductions to EU seas, although there was very rarely direct evidence of this. The study highlights the need to overcome the pathway uncertainties, as robust information on introduction pathways is critical to manage new NIS introductions effectively.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Correia, Sofia; Ribeiro, Inês; Braga-Henriques, Andreia; etc,; Carvalho, Maria F.
Exploring deep-sea Actinomycetota chemical diversity by using the OSMAC approach Journal Article
In: Frontiers in Marine Science, vol. 13, no. 1754764, 2026.
@article{nokey,
title = {Exploring deep-sea Actinomycetota chemical diversity by using the OSMAC approach},
author = {Sofia Correia and Inês Ribeiro and Andreia Braga-Henriques and etc and Maria F. Carvalho},
url = {https://www.frontiersin.org/journals/marine-science/articles/10.3389/fmars.2026.1754764/full},
doi = {10.3389/fmars.2026.1754764},
year = {2026},
date = {2026-02-06},
journal = {Frontiers in Marine Science},
volume = {13},
number = {1754764},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Valente, Raul; Machado, André M; Pericuesta, Eva; etc,; Alves, Filipe; etc,; Castro, L Filipe C
Parallel Erosion of a Testis-Specific Na+/K+ ATPase in Three Mammalian Lineages Sheds Light into the Evolution of Spermatozoa Energetics Journal Article
In: Genome Biology and Evolution, vol. 18, no. 2, pp. evaf246, 2026, ISSN: 1759-6653.
@article{10.1093/gbe/evaf246,
title = {Parallel Erosion of a Testis-Specific Na+/K+ ATPase in Three Mammalian Lineages Sheds Light into the Evolution of Spermatozoa Energetics},
author = {Raul Valente and André M Machado and Eva Pericuesta and etc and Filipe Alves and etc and L Filipe C Castro},
url = {https://doi.org/10.1093/gbe/evaf246},
doi = {10.1093/gbe/evaf246},
issn = {1759-6653},
year = {2026},
date = {2026-02-02},
urldate = {2026-01-01},
journal = {Genome Biology and Evolution},
volume = {18},
number = {2},
pages = {evaf246},
abstract = {Understanding how extant physiological landscapes arise from novel genetic interactions is key to elucidating phenotypic evolution. Sperm cells exemplify a striking case of functional compartmentalization shaped by molecular adjustments, notably regarding energy metabolism. Here, we examine the impact of gene duplication and loss on the evolution of sperm energetics in mammals. Our findings reveal that the acquisition of an exclusive mechanism controlling the sperm plasma membrane Na+ gradient, critical for glucose uptake, emerged in the ancestor of mammals through gene duplication, which originated the Na+/K+ ATPase transporting subunit alpha 4 transporter (Atp1a4). Furthermore, we demonstrate that testis-specific expression of Atp1a4 was acquired after the divergence from monotremes. Notably, we identify three independent pseudogenization events of Atp1a4, including in pangolins, the naked mole-rat (Heterocephalus glaber) and toothed whales. The recurrent loss of function in Atp1a4 coincides with the erosion of the testis-specific glycolytic pathway in these lineages. Furthermore, enrichment analysis of striped dolphin (Stenella coeruleoalba) and naked mole-rat testis transcriptomes also suggests significant alterations in sperm capacitation processes. Overall, we show that the elaboration of a sodium-dependent glucose uptake wiring was a key innovation in the energetic landscape governing mammalian spermatozoa, with secondary gene loss in three separate lineages pointing to drastic alterations in motility and capacitation processes. Our findings illustrate how metabolic pathways co-shaped by gene duplication and erosion define extant physiological phenotypes.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Humet, Mar; Seabra, Rui; Lima, Fernando P.; Monteiro, Catia; Canning-Clode, João; Monteiro, João G.; Nieto-Vilela, Rocío
Intertidal Invertebrate Diversity of the Selvagens Islands: A Baseline Inventory Journal Article
In: Thalassas, vol. 42, no. 16, 2026.
@article{nokey,
title = {Intertidal Invertebrate Diversity of the Selvagens Islands: A Baseline Inventory},
author = {Mar Humet and Rui Seabra and Fernando P. Lima and Catia Monteiro and João Canning-Clode and João G. Monteiro and Rocío Nieto-Vilela},
url = {https://link.springer.com/article/10.1007/s41208-025-01022-y#citeas},
doi = {10.1007/s41208-025-01022-y},
year = {2026},
date = {2026-01-27},
journal = {Thalassas},
volume = {42},
number = {16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Radeta, Marko; Behboodi, Zahra; Zekovic, Vladimir; etc,; Pestana, João; Vieira, Dinarte; Almeida, Sílvia; Dias, Morgado; Clode, João Canning; Caldeira, Rui; Relvas, Paulo; Vasiljevic, Antonio
MARS Lander: Georeferencing Landing and Pop Points of Untethered Ocean Monitoring Systems using Fundamental Physics Journal Article
In: Deep Sea Research Part I: Oceanographic Research Papers, pp. 104650, 2026, ISSN: 0967-0637.
@article{RADETA2026104650,
title = {MARS Lander: Georeferencing Landing and Pop Points of Untethered Ocean Monitoring Systems using Fundamental Physics},
author = {Marko Radeta and Zahra Behboodi and Vladimir Zekovic and etc and João Pestana and Dinarte Vieira and Sílvia Almeida and Morgado Dias and João Canning Clode and Rui Caldeira and Paulo Relvas and Antonio Vasiljevic},
url = {https://www.sciencedirect.com/science/article/pii/S0967063726000038},
doi = {https://doi.org/10.1016/j.dsr.2026.104650},
issn = {0967-0637},
year = {2026},
date = {2026-01-20},
urldate = {2026-01-20},
journal = {Deep Sea Research Part I: Oceanographic Research Papers},
pages = {104650},
abstract = {Subsurface observations are crucial for understanding the ocean's role in Earth’s climate and for refining climate models. However, existing aquatic monitoring systems that allow such insights remain complex and costly due to their high demands for deployment, sampling, and recapture. Since low-cost, easy-to-deploy deep-sea landers are scarce, and with the aim of facilitating more subsurface observations, this study provides a simple method for georeferencing small-sized untethered landers. Their underwater trajectories are modelled with fundamental physics, dead reckoning, lander geometry, and numerical simulations. Using free fall, upthrust, and ocean current dynamics, the proposed approach estimates their underwater trajectories, including landing (at the seabed) and pop (at the sea surface) points. The method relies on the lander's physical characteristics, including its vertical and horizontal cross-sectional areas, to calculate the drag force coefficients used to determine its trajectories during descent and ascent through the water column. Ocean currents' magnitudes are modelled using Ekman’s exponential decay down to 90 m of the water column, while the depths until 900 m are modelled from prior ADCP surveys by varying ocean current headings with depth between -20 and 20 degrees. Surface ocean and wind current headings are modelled with open datasets from satellite telemetry. Lander's velocity, displacement, and dive time to the landing and pop points, including the total radial excursion and uncertainty in heading, are analytically derived, numerically calculated, and empirically assessed a-posteriori until 90 m, yielding a ∼38 m radial excursion (40% error) against the obtained GNSS coordinates in field deployment, and 33 degrees in heading uncertainty during a 138-second excursion. Additional random walk simulations are shown for full ocean depth obtaining radial excursion of 1,038 m with 278 min total dive time. This approach is generalizable to any subsurface aquatic monitoring systems targeting deployments with diverse payloads from smaller sea vessels, not requiring cranes, radio, GNSS, or acoustic telemetry. Since it accounts for key nature factors, our method provides special benefits in planning and optimizing deployments. Additional discussion focuses on the method's practicality for full ocean depth deployments.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Íñiguez, Eva; Gouazé, Margaux; Dinis, Ana; Sosa-Ferrera, Zoraida; Cordeiro, Nereida; Kaufmann, Manfred; Montesdeoca-Esponda, Sarah
Development and preliminary validation of an analytical methodology for the determination of organic UV filters in zooplankton samples Journal Article
In: Marine Pollution Bulletin, vol. 225, pp. 119204, 2026, ISSN: 0025-326X.
@article{INIGUEZ2026119204,
title = {Development and preliminary validation of an analytical methodology for the determination of organic UV filters in zooplankton samples},
author = {Eva Íñiguez and Margaux Gouazé and Ana Dinis and Zoraida Sosa-Ferrera and Nereida Cordeiro and Manfred Kaufmann and Sarah Montesdeoca-Esponda},
url = {https://www.sciencedirect.com/science/article/pii/S0025326X25016807},
doi = {https://doi.org/10.1016/j.marpolbul.2025.119204},
issn = {0025-326X},
year = {2026},
date = {2026-01-15},
urldate = {2026-01-01},
journal = {Marine Pollution Bulletin},
volume = {225},
pages = {119204},
abstract = {The release of chemicals into marine environments from coastal human activities has raised growing concern about pollution. Among these chemicals, organic ultraviolet filters (oUVFs), widely used in personal care products and industrial applications, have recently been identified as pollutants of emerging concern. Their extensive use and persistence highlight the need to assess their occurrence and potential impacts on aquatic ecosystems. This study aimed to optimize and apply an analytical methodology for the determination of eleven oUVFs in zooplankton matrices. Microwave-assisted extraction (MAE) was employed for sample preparation, while ultra-high-performance liquid chromatography coupled with tandem mass spectrometry (UHPLC-MS/MS) enabled the identification and quantification of the target compounds. Extraction parameters, including solvent, temperature, and time, were systematically optimized to enhance recovery and ensure accuracy and precision in complex biological samples. The method achieved limits of detection (MLOD) between 1.47 and 5.98 ng g−1 dry weight (d.w.) and method limits of quantification (MLOQ) between 4.900 and 19.92 ng g−1 d.w. Recovery efficiencies were low, ranging from 28 to 63 %, reflecting the diverse physicochemical properties of oUVFs and the strong matrix effects associated with zooplankton heterogeneity. Application of the validated method to zooplankton collected around Madeira Island (Portugal) revealed the presence of six oUVFs. Homosalate was the most frequently detected compound (53 % of samples), while octocrylene exhibited the highest concentrations, ranging from 24.01 to 1029 ng g−1 d.w. These findings demonstrate the relevance of zooplankton as bioindicators of oUVF contamination and support the need for regulatory monitoring and ecological risk assessments in coastal ecosystems.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Riaz, Javed; Nilssen, Kjell T.; Biuw, Martin; etc,; Freitas, Carla
Haul-Out Site Use and Connectivity of Harbour Seals Between Management Units in Southern Scandinavia Journal Article
In: Ecology and Evolution, vol. 16, no. 1, pp. e72718, 2026, (e72718 ECE-2025-10-02633.R1).
@article{https://doi.org/10.1002/ece3.72718,
title = {Haul-Out Site Use and Connectivity of Harbour Seals Between Management Units in Southern Scandinavia},
author = {Javed Riaz and Kjell T. Nilssen and Martin Biuw and etc and Carla Freitas},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.72718},
doi = {https://doi.org/10.1002/ece3.72718},
year = {2026},
date = {2026-01-13},
urldate = {2026-01-13},
journal = {Ecology and Evolution},
volume = {16},
number = {1},
pages = {e72718},
abstract = {ABSTRACT Harbour seals (Phoca vitulina) have a broad distribution in coastal ecosystems across the northern hemisphere. In southern Scandinavia, a lack of spatially-resolved data on harbour seal populations poses a major challenge for developing ecologically informed management frameworks, particularly in Norway, where populations are regulated using county-level administrative boundaries. In this study, we use haul-out data from 26 harbour seals tagged with GPS phone tags during the post-moult period to provide the first assessment of connectivity and movement across management boundaries in the Skagerrak–Kattegat region of southern Scandinavia. Specifically, we examined the frequency and timing of haul-out events relative to management units and quantified spatial networks of connectivity across national and sub-national jurisdictions. We reveal a high degree of spatial connectivity in the region, with haul-outs occurring over a broad, integrated network along the Skagerrak–Kattegat coastline. Generally, harbour seals in the region had a high probability of performing cross-boundary haul-out events, with individuals repeatedly transitioning across distinct Norwegian management units, as well as transnationally between Norway, Sweden and Denmark. This study offers critical insights into harbour seal movement ecology in this data-limited region, whilst also addressing an important topic of applied management. We demonstrate that the current management units in the Norwegian Skagerrak may not adequately reflect the spatiotemporal scales of harbour seal movement. Importantly, these findings can complement forthcoming genetic data and support efforts to redefine management units in the area. More broadly, our study illustrates how telemetry-based assessments of spatial connectivity can provide a powerful tool to inform management frameworks for other wide-ranging marine species facing similar conservation challenges.},
note = {e72718 ECE-2025-10-02633.R1},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Vilizzi, Lorenzo; Suresh, Vettath Raghavan; Giannetoo, Daniela; etc,; Monteiro, João G.; etc,; Canning-Clode, João; etc,; Piria, Marina
Global framework for communication of biological invasion risks Journal Article
In: Management of Biological Invasions, vol. 17, iss. 1, pp. 1-33, 2026.
@article{nokey,
title = {Global framework for communication of biological invasion risks},
author = {Lorenzo Vilizzi and Vettath Raghavan Suresh and Daniela Giannetoo and etc and João G. Monteiro and etc and João Canning-Clode and etc and Marina Piria},
url = {https://www.reabic.net/journals/mbi/2026/1/MBI_2026_Vilizzi_etal.pdf},
doi = {10.3391/mbi.2026.17.1.01},
year = {2026},
date = {2026-01-01},
journal = {Management of Biological Invasions},
volume = {17},
issue = {1},
pages = {1-33},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Domínguez-Hernández, Cristopher; Villanova-Solano, Cristina; Álvarez, Soledad; etc,; Canning-Clode, João; etc,; Nogueira, Natacha; etc,; Ramalhosa, Patrício; etc,; Hernández-Borges, Javier
Plastic occurrence in Macaronesia: Three years of monitoring on forty-six beaches across nineteen islands in an Atlantic region Journal Article
In: Science of The Total Environment, vol. 1010, pp. 181064, 2026, ISSN: 0048-9697.
@article{DOMINGUEZHERNANDEZ2026181064,
title = {Plastic occurrence in Macaronesia: Three years of monitoring on forty-six beaches across nineteen islands in an Atlantic region},
author = {Cristopher Domínguez-Hernández and Cristina Villanova-Solano and Soledad Álvarez and etc and João Canning-Clode and etc and Natacha Nogueira and etc and Patrício Ramalhosa and etc and Javier Hernández-Borges},
url = {https://www.sciencedirect.com/science/article/pii/S0048969725027044},
doi = {https://doi.org/10.1016/j.scitotenv.2025.181064},
issn = {0048-9697},
year = {2026},
date = {2026-01-01},
urldate = {2026-01-01},
journal = {Science of The Total Environment},
volume = {1010},
pages = {181064},
abstract = {In recent decades, plastic pollution has reached alarming levels in all environmental compartments of the planet, with the oceans being one of the most affected. Despite being far from any major direct source of pollution, the Macaronesian region (North Atlantic Ocean) is highly exposed to marine litter, mostly plastics. In this study, a total of 46 beaches on 19 islands of 4 archipelagos in Macaronesia were seasonally monitored between 2020 and 2023 in a total of 430 field expeditions to study the presence and extent of micro-, meso-, and macroplastics pollution. Overall, a total of 271,203 plastic items were collected, weighted, and classified according to their size, shape, colour, and chemical composition. The results showed the presence of plastic marine litter on all the beaches studied, with an average concentration of 1760 items/m2 and 15.30 g/m2 for microplastics, 315 items/m2 and 15.58 g/m2 for mesoplastics, and 35 items/m2 and 11.81 g/m2 for macroplastics, with the Canary Islands being the archipelago with the highest concentrations. Fragments (83.3 %), with a predominance of white and colourless (62.9 %), and polyethylene and polypropylene as the main types of polymer, 81.2 % and 11.4 %, respectively, were the plastic particles mainly found. Monitoring of 28 previously unstudied beaches revealed the presence of 5 new hotspots of plastic arrival. Statistical analysis revealed that beaches with northwest to east orientations were receiving a higher concentration of plastic litter than the opposite orientations. However, in the central group of the Azores, a notable hotspot was found on a beach oriented toward the southwest. These spatial patterns clearly reflect the influence of prevailing ocean currents associated with the North Atlantic Subtropical Gyre, which plays a key role in transporting plastic debris throughout the region. These results may contribute to a better understanding of plastic transport phenomena in a vast oceanic region such as Macaronesia and provide a foundation for further studies in other areas.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2025
Olapade, Mayowa; Akintola, Adeyinka; Yin, Zhigang; Kuchida, Reo; Radeta, Marko; Flores, Huber
Tiny but Mighty: When Smart Rings Meet Large Language Models Proceedings Article
In: Companion of the 2025 ACM International Joint Conference on Pervasive and Ubiquitous Computing, pp. 1541–1547, Association for Computing Machinery, Finland, 2025, ISBN: 9798400714771.
@inproceedings{10.1145/3714394.3756295,
title = {Tiny but Mighty: When Smart Rings Meet Large Language Models},
author = {Mayowa Olapade and Adeyinka Akintola and Zhigang Yin and Reo Kuchida and Marko Radeta and Huber Flores},
url = {https://doi.org/10.1145/3714394.3756295},
doi = {10.1145/3714394.3756295},
isbn = {9798400714771},
year = {2025},
date = {2025-12-29},
urldate = {2026-01-01},
booktitle = {Companion of the 2025 ACM International Joint Conference on Pervasive and Ubiquitous Computing},
pages = {1541–1547},
publisher = {Association for Computing Machinery},
address = {Finland},
series = {UbiComp Companion '25},
abstract = {Large Language Models have emerged as powerful tools for interpreting sensor data through natural language, unlocking new possibilities for context-aware interactions in pervasive computing. Smart rings, with their unobtrusive design and close-contact sensing capabilities, offer distinct advantages over other wearables but remain largely underexplored beyond standard applications. In this paper, we systematically evaluate the potential of smart rings for fine-grained activity monitoring with the support of LLMs. We begin by comparing their sensing performance to smartwatches in capturing hand gestures and motion patterns. We then introduce a novel use case: smart ring–based monitoring of toothbrushing behavior. Through a user study with N=8 participants, we collect brushing data and analyze it using an LLM, demonstrating its ability not only to recognize activity but also to extract personalized behavioral insights. Our findings highlight the promise of combining smart ring sensing with LLMs to enable more intelligent, adaptive, and user-aware applications.},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Veylit, Lara; Brönner, Ute; Fischer, Kari; etc,; Monteiro, Joao; etc,; Øverjordet, Ida
Democratizing marine restoration best practices in a digital toolbox Journal Article
In: International Journal of Data Science and Analytics, vol. 21, 2025.
@article{article_61,
title = {Democratizing marine restoration best practices in a digital toolbox},
author = {Lara Veylit and Ute Brönner and Kari Fischer and etc and Joao Monteiro and etc and Ida Øverjordet},
doi = {10.1007/s41060-025-00926-5},
year = {2025},
date = {2025-12-10},
urldate = {2025-01-01},
journal = {International Journal of Data Science and Analytics},
volume = {21},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Yin, Zhigang; Radeta, Marko; Post, Kevin; etc,; Flores, Huber
BEE: Opportunistic Heat-based Bio-sensing for Produce Quality Monitoring Journal Article
In: Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., vol. 9, no. 4, 2025.
@article{10.1145/3770645,
title = {BEE: Opportunistic Heat-based Bio-sensing for Produce Quality Monitoring},
author = {Zhigang Yin and Marko Radeta and Kevin Post and etc and Huber Flores},
url = {https://doi.org/10.1145/3770645},
doi = {10.1145/3770645},
year = {2025},
date = {2025-12-02},
urldate = {2025-12-01},
journal = {Proc. ACM Interact. Mob. Wearable Ubiquitous Technol.},
volume = {9},
number = {4},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
abstract = {Fruits and vegetables have a short shelf life, resulting in significant amounts of unsold produce in retail stores, which contributes to food waste and financial losses. To address this issue, retailers require innovative technologies that enhance stock estimation and influence customer behavior. Monitoring systems that track expiration dates and assess the quality of organic products show promise, but they must be easy to deploy, maintain, and scale for widespread adoption. We introduce BEE, an innovative solution for produce quality estimation that leverages collaborative heat-based bio-sensing from customer interactions. BEE addresses a critical gap in current solutions: lack of user-friendly approaches that are easy to deploy and manage. BEE operates by capturing superficial heat residuals left by customers interacting with fresh produce using a thermal camera, which are then used to construct thermal dissipation profiles that enable accurate quality estimation. Constructing these profiles from sparse and variable thermal residuals in different environments, however, is highly challenging. To overcome this challenge, the key innovations in BEE are the use of opportunistically collected thermal residuals for profiling produce, integration of novel AI image enhancement techniques for improving the quality of thermal residual, AI-based calibration to overcome variations in interactions and consumer characteristics, and a novel computer vision pipeline to facilitate effective estimation. We validate the practicality of BEE through rigorous experiments, demonstrating its ability to capture decay patterns from human heat residuals. Our results indicate that BEE can achieve over 95% accuracy in estimating produce quality while operating robustly across varying environmental conditions and outperforming existing state-of-the-art solutions. Additionally, user studies reveal that BEE is intuitive and user-friendly, achieving the 90th percentile in an user satisfaction survey.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Eide, Stine; Rikardsen, Audun; Carla, Freitas
Comparative diving patterns of two minke whales (Balaenoptera acutorostrata) and two fin whales (Balaenoptera physalus) in Northern Norway Journal Article
In: Animal Biotelemetry, vol. 13, 2025.
@article{article_62,
title = {Comparative diving patterns of two minke whales (Balaenoptera acutorostrata) and two fin whales (Balaenoptera physalus) in Northern Norway},
author = {Stine Eide and Audun Rikardsen and Freitas Carla},
doi = {10.1186/s40317-025-00432-2},
year = {2025},
date = {2025-11-19},
urldate = {2025-01-01},
journal = {Animal Biotelemetry},
volume = {13},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Escánez, Alejandro; Roura, Álvaro; Lugo, David; Wirtz, Peter
In: Folia Malacologica, 2025, ISSN: 1506-7629.
@article{Escánez2025,
title = {Northernmost record of Amphioctopus burryi (Mollusca: Cephalopoda) in the Eastern Atlantic and molecular confirmation of its amphi-Atlantic distribution},
author = {Alejandro Escánez and Álvaro Roura and David Lugo and Peter Wirtz},
url = {https://doi.org/10.12657/folmal.033.023},
doi = {10.12657/folmal.033.023},
issn = {1506-7629},
year = {2025},
date = {2025-11-13},
urldate = {2025-01-01},
journal = {Folia Malacologica},
abstract = {The tropical brown-striped octopus ( Amphioctopus burryi ) is recorded for the first time from Madeira Island. Its identification was confirmed through morphological analysis and DNA barcoding molecular techniques. By also analysing specimens from the Canary Islands and Cabo Verde Islands, we provide evidence supporting the amphi-Atlantic distribution of this species. Furthermore, we discuss the potential role of ongoing ocean warming in the expansion of A. burryi in the Canary Islands and its recent record in Madeira Island.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kiessling, Tim; Rech, Sabine; Reus, Klaus; Walker, Tony R
In: Cambridge Prisms: Plastics, pp. 1–15, 2025.
@article{Kiessling_Rech_Reus_Walker_2025,
title = {Underrepresented developing States, marginalized communities, big business and procedural injustice – how equal were the UN INC-5.2 Global Plastic Treaty negotiations?},
author = {Tim Kiessling and Sabine Rech and Klaus Reus and Tony R Walker},
doi = {10.1017/plc.2025.10037},
year = {2025},
date = {2025-11-12},
urldate = {2025-01-01},
journal = {Cambridge Prisms: Plastics},
pages = {1–15},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Zuniga, Agustin; Khan, Musfira; Nguyen, Ngoc Thi; etc,; Radeta, Marko; etc,; Nurmi, Petteri
Thermal Smart Plants: Thermal Sensing for Non-Intrusive Device Energy Disaggregation Proceedings Article
In: Proceedings of the 2025 ACM International Workshop on Thermal Sensing and Computing, pp. 28–33, Association for Computing Machinery, Hong Kong, China, 2025, ISBN: 9798400719820.
@inproceedings{10.1145/3737905.3769283,
title = {Thermal Smart Plants: Thermal Sensing for Non-Intrusive Device Energy Disaggregation},
author = {Agustin Zuniga and Musfira Khan and Ngoc Thi Nguyen and etc and Marko Radeta and etc and Petteri Nurmi},
url = {https://doi.org/10.1145/3737905.3769283},
doi = {10.1145/3737905.3769283},
isbn = {9798400719820},
year = {2025},
date = {2025-11-04},
urldate = {2025-11-04},
booktitle = {Proceedings of the 2025 ACM International Workshop on Thermal Sensing and Computing},
pages = {28–33},
publisher = {Association for Computing Machinery},
address = {Hong Kong, China},
series = {HotSense '25},
abstract = {We contribute an innovative and non-intrusive method for disaggregating the energy load of different devices using thermal and environmental sensors embedded in plant containers. Indoor plants are ubiquitous, and obtaining containers with sensors that monitor growth conditions is becoming increasingly common. Our work harnesses these developments, providing a non-intrusive and real-time monitoring system that uses residual thermal radiation to identify nearby appliances and disaggregate them. Proof-of-concept experiments considering devices with high and low energy profiles demonstrate that our approach can accurately identify electric appliances and support the disaggregation of power measurements for more accurate load monitoring.},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Freitas, Cátia; Costa, Micaela; Dias, Marta; Redaelli, Laura; Ferreira, Rita; Alves, Filipe; Moura, Filipe
In: Aquatic Mammals, vol. 51, pp. 417-420, 2025.
@article{article_60,
title = {First Sighting of the Pantropical Spotted Dolphin (Stenella attenuata) in the Madeira Archipelago: A New Northern Range in the East Atlantic Ocean},
author = {Cátia Freitas and Micaela Costa and Marta Dias and Laura Redaelli and Rita Ferreira and Filipe Alves and Filipe Moura},
doi = {10.1578/AM.51.6.2025.417},
year = {2025},
date = {2025-11-01},
urldate = {2025-01-01},
journal = {Aquatic Mammals},
volume = {51},
pages = {417-420},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Íñiguez, Eva; Silva, Rodrigo Pires; Montesdeoca-Esponda, Sarah; Dimou, Elli; Alves, Filipe; Kaufmann, Manfred; Dinis, Ana; Cordeiro, Nereida
The invisible impact of tourism: organic UV filters in the coastal ecosystem of a remote Atlantic island Journal Article
In: Environmental Research, vol. 287, pp. 123153, 2025, ISSN: 0013-9351.
@article{INIGUEZ2025123153,
title = {The invisible impact of tourism: organic UV filters in the coastal ecosystem of a remote Atlantic island},
author = {Eva Íñiguez and Rodrigo Pires Silva and Sarah Montesdeoca-Esponda and Elli Dimou and Filipe Alves and Manfred Kaufmann and Ana Dinis and Nereida Cordeiro},
url = {https://www.sciencedirect.com/science/article/pii/S0013935125024065},
doi = {https://doi.org/10.1016/j.envres.2025.123153},
issn = {0013-9351},
year = {2025},
date = {2025-10-31},
urldate = {2025-01-01},
journal = {Environmental Research},
volume = {287},
pages = {123153},
abstract = {Coastal tourism and recreational activities contribute to the release of Personal Care Products, including sunscreens, which contain organic ultraviolet filters (oUVFs), increasingly recognised as contaminants of emerging concern in marine ecosystems. Oceanic islands offer natural laboratories for studying these compounds due to their isolated ecosystems and varying levels of human pressure. This study investigates the occurrence and distribution of oUVFs in seawater, sediments, and biota from three locations in the Madeira Archipelago with varying human influence, sampled during both high and low tourist seasons. Solid-phase extraction (SPE) and microwave-assisted extraction (MAE) were used as extraction methods, followed by UHPLC-MS/MS for identification and quantification. Eight of 11 target compounds were detected in at least one matrix. Total maximum concentrations reached 70.61 ng/L in seawater, 299.8 ng/g d.w. in algae, 472.2 ng/g d.w. in fish, and 651.33 ng/g d.w. in zooplankton. Detection frequencies and levels were highest at the site with the most significant anthropogenic pressure during the high tourist season. Zooplankton showed the highest accumulation levels, followed by herbivorous fish and red algae, while no oUVFs were detected in mesopredators and some invertebrates. Contamination was associated with proximity to shore and direct inputs linked with anthropogenic pressure. However, the oceanographic (e.g., currents, tides) and geological characteristics (rocky reefs) of oceanic islands must also be considered, as they can affect the environmental fate and distribution of oUVFs across different matrices. These findings highlight the need to monitor oUVFs in marine environments and identify susceptible species to improve ecological risk assessment and regulatory actions.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Allcock, A. Louise; Amon, Diva J.; Bridges, Amelia E. H.; etc,; Braga-Henriques, Andreia; etc,; Zwerschke, Nadescha
Deep-sea ecosystems of the North Atlantic Ocean: discovery, status, function and future challenges Journal Article
In: Deep Sea Research Part I: Oceanographic Research Papers, vol. 226, pp. 104580, 2025, ISSN: 0967-0637.
@article{ALLCOCK2025104580,
title = {Deep-sea ecosystems of the North Atlantic Ocean: discovery, status, function and future challenges},
author = {A. Louise Allcock and Diva J. Amon and Amelia E. H. Bridges and etc and Andreia Braga-Henriques and etc and Nadescha Zwerschke},
url = {https://www.sciencedirect.com/science/article/pii/S0967063725001384},
doi = {https://doi.org/10.1016/j.dsr.2025.104580},
issn = {0967-0637},
year = {2025},
date = {2025-10-24},
urldate = {2025-10-24},
journal = {Deep Sea Research Part I: Oceanographic Research Papers},
volume = {226},
pages = {104580},
abstract = {The North Atlantic is an ocean basin with a diversity of deep-sea ecosystems. Here we provide a summary of the topography and oceanography of the North Atlantic including the Gulf of Mexico and Caribbean Sea, provide a brief overview of the history of scientific research therein, and review the current status of knowledge of each of 18 pelagic and benthic deep-sea ecosystems, with a particular focus on knowledge gaps. We analyse biodiversity data records across the North Atlantic and highlight spatial data gaps that could provide important foci for future expeditions. We note particular data gaps in EEZs of nations within and bordering the Caribbean Sea. Our data provide a baseline against which progress can be tracked into the future. We review human impacts caused by fishing, shipping, mineral extraction, introduction of substances, and climate change, and provide an overview of international, regional and national measures to protect ecosystems. We recommend that scientific research in the deep sea should focus on increasing knowledge of the distribution and the connectivity of key species and habitats, and increasing our understanding of the processes leading to the delivery of ecosystem services. These three pillars - distribution, connectivity, ecosystem function - will provide the knowledge required to implement conservation and management measures to ensure that any deep-sea development in the future is sustainable. Infrastructure and capacity are unevenly distributed and implementation of strategies that will lead to more equitable deep-sea science is required to ensure that essential science can be delivered.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Riera, Rodrigo; Vasconcelos, Joana; Baden, Susanne; Martínez, Alejandro; Infantes, Eduardo
Towards a more integrative environmental assessment: Infauna as tool for Zostera marina conservation management Journal Article
In: PLOS ONE, vol. 20, no. 10, pp. 1-20, 2025.
@article{10.1371/journal.pone.0334934,
title = {Towards a more integrative environmental assessment: Infauna as tool for Zostera marina conservation management},
author = {Rodrigo Riera and Joana Vasconcelos and Susanne Baden and Alejandro Martínez and Eduardo Infantes},
url = {https://doi.org/10.1371/journal.pone.0334934},
doi = {10.1371/journal.pone.0334934},
year = {2025},
date = {2025-10-21},
urldate = {2025-01-01},
journal = {PLOS ONE},
volume = {20},
number = {10},
pages = {1-20},
publisher = {Public Library of Science},
abstract = {Seagrasses are highly sensitive to human-induced disturbances and global environmental changes. Since the 1980s, Zostera marina meadows along the West Swedish coast (Skagerrak) have declined significantly, as evidenced by changes in morpho-anatomical traits, reductions in area coverage, and shifts in associated communities. However, infaunal assemblages within Z. marina meadows remain understudied compared to epifaunal communities and have not been previously used as indicators of seagrass regression. To investigate spatial variability in infaunal composition, we analysed samples from 15 coastal stations at depths of 1.5–3 m depth. Using an n-dimensional hypervolume framework, we assessed functional differences between infaunal and epifaunal communities. We examined infaunal community descriptors—such as species richness and individual abundance—biotic indices, environmental drivers (including wave exposure and Z. marina biomass), and correlations with epifauna. Variability in infaunal composition across sampling stations was primarily driven by differences in the abundance of dominant taxa, including the polychaete Capitella capitata, oligochaetes, nematodes, and chironomids. Several coastal stations, such as Marstrand and Finsbo, were classified as moderately polluted, though biotic indices, i.e., AMBI, M-AMBI and ISI, showed discrepancies. Spatial patterns in infaunal assemblages were mainly influenced by Z. marina biomass and maximum fetch, with a good representation of oligochaetes and chironomids in exposed stations. These findings suggest that infauna respond differently from epifauna but provide valuable additional insights into the ecological status, functional traits, and trophic diversity of Z. marina meadows. Integrating multiple community components is essential for a more comprehensive understanding of the processes and patterns driving seagrass ecosystem regression.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Freitas, Carla; Skogen, Morten D.; Sigurðsson, Guðjón M.; etc,; Gundersen, Kjell
Impact of baleen whales on ocean primary production across space and time Journal Article
In: Proceedings of the National Academy of Sciences, vol. 122, no. 43, pp. e2505563122, 2025.
@article{<LineBreak>doi:10.1073/pnas.2505563122,
title = {Impact of baleen whales on ocean primary production across space and time},
author = {Carla Freitas and Morten D. Skogen and Guðjón M. Sigurðsson and etc and Kjell Gundersen},
url = {https://www.pnas.org/doi/abs/10.1073/pnas.2505563122},
doi = {10.1073/pnas.2505563122},
year = {2025},
date = {2025-10-20},
urldate = {2025-01-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {122},
number = {43},
pages = {e2505563122},
abstract = {Whales have long been suggested to enhance ocean productivity by recycling essential nutrients, yet their quantitative impact on primary production has remained uncertain. Our study quantifies nutrient release via feces and urine by baleen whales in high-latitude feeding grounds and evaluates its impact on primary production using ecosystem models. Results indicate that whales enhance ocean productivity, particularly in offshore regions where nutrients are scarce, leading to cascading effects on the food web. These findings highlight the ecological importance of whale-mediated nutrient cycling and emphasize the role of whale populations in sustaining productive and resilient marine ecosystems. Primary production in the ocean is a fundamental process that supports marine food webs and global carbon sequestration. This process depends on nutrients that are often limited in surface waters. Whales are known to release essential elements such as nitrogen, phosphorus, and iron, yet the extent of their contribution to ocean primary production remains unclear. Here, we present daily estimates of nutrient input by baleen whales in high-latitude feeding grounds (Nordic and Barents Seas), based on multielement analyses of feces and urine. We then used end-to-end ecosystem models to assess the impact of these nutrients on primary production. We found that nitrogen is primarily excreted via urine, whereas phosphorus and trace elements are mainly released through feces. Ecosystem models indicate that baleen whales, including minke, fin, sei, humpback, blue, and bowhead whales, support annual and seasonal net primary production, with varying impacts across space and time. While the annual effects are modest (<2%) in most areas, the greatest impacts (up to 10%) occur during summer stratification and in offshore areas far from other nutrient sources. These increases in primary production have cascading effects on the food web, driving rises in mesozooplankton biomass. This study highlights the ecological significance of nutrient cycling by whales and underscores the value of integrating whale nutrient data into ecosystem modeling to assess the broader impacts of whales on marine productivity.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Guerra-García, José; Desiderato, Andrea; Mucciolo, Serena; etc,; Gestoso, Ignacio; Ramalhosa, Patrício; Canning-Clode, João; etc,; Cacabelos, Eva; etc,; Saenz-Arias, Pablo
In: Mediterranean Marine Science, vol. 26, pp. 842-859, 2025.
@article{article_59,
title = {The spread of Aoroides longimerus Ren & Zheng, 1996 across the Mediterranean and the Atlantic: genetic diversity, anthropogenic transport, and ecological implications},
author = {José Guerra-García and Andrea Desiderato and Serena Mucciolo and etc and Ignacio Gestoso and Patrício Ramalhosa and João Canning-Clode and etc and Eva Cacabelos and etc and Pablo Saenz-Arias},
doi = {10.12681/mms.41784},
year = {2025},
date = {2025-10-17},
urldate = {2025-01-01},
journal = {Mediterranean Marine Science},
volume = {26},
pages = {842-859},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Rech, Sabine; Vieira, Leandro M.; Varela, Andrea I.; etc,; Thiel, Martin
Seek and you shall find: Detection of alien bryozoans along the Chilean SE Pacific coast with a simple and cost-efficient methodology Journal Article
In: NeoBiota, vol. 102, pp. 269-294, 2025, ISSN: 1619-0033.
@article{10.3897/neobiota.102.144725,
title = {Seek and you shall find: Detection of alien bryozoans along the Chilean SE Pacific coast with a simple and cost-efficient methodology},
author = {Sabine Rech and Leandro M. Vieira and Andrea I. Varela and etc and Martin Thiel},
url = {https://doi.org/10.3897/neobiota.102.144725},
doi = {10.3897/neobiota.102.144725},
issn = {1619-0033},
year = {2025},
date = {2025-10-07},
urldate = {2025-01-01},
journal = {NeoBiota},
volume = {102},
pages = {269-294},
publisher = {Pensoft Publishers},
abstract = {Invasions by non-indigenous species (NIS) are among the major problems that coastal ecosystems are facing globally and are driven by anthropogenic activities, such as international vessel traffic and aquaculture. Bryozoans are typical constituents of vessel hull-fouling communities, and the phylum contains several notorious globally invasive species. Few NIS, including bryozoan species, are reported along the Chilean Southeast Pacific coast, which has traditionally been attributed to the local oceanographic and ecologic conditions. However, the low numbers may also be the consequence of insufficient monitoring, as well as the small size and morphologic similarity of many species, which hinders their detection. Here, we deployed artificial floating settlement plates in strategic locations (ports/marinas or aquaculture sites) along the Chilean coast (from 29°S to 41°S), to detect non-indigenous bryozoans. With this method, we found a total of 14 species, including five NIS and four cryptogenic species. Additionally, we report two NIS from opportunistic findings in the rocky intertidal zone and from a piece of plastic litter. Three species represent new records from Chile: Bugulina cf. fulva, Bugulina stolonifera, and Watersipora arcuata. These are described in detail in the present paper. The new records importantly enhance the number of known (bryozoan) invasions along the Chilean coast and corroborate the need for regular monitoring. The installation of artificial settlement plates at high-risk sites (especially ports and marinas) has proven to be a successful and efficient low-cost approach, which can help to detect NIS introductions in their early stages, before spreading to natural environments. Regular monitoring of these sites, as well as compulsory legislation for hull cleaning, both for long-distance (nationally and internationally) travelling and local vessels, could greatly reduce the problem.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Órfão, Inês; Silva, Luis; Girão, Dinis; etc,; Biscoito, Manuel; Canning-Clode, João; Ribeiro, Filipe; Ferreira, Sonia
In: BioInvasions Records, vol. 14, pp. 641-651, 2025.
@article{article_58,
title = {Occurrence of the eastern mosquitofish Gambusia holbrooki Girard, 1859 (Poeciliidae, Cyprinodontiformes) in the Madeira Archipelago (NE Atlantic)},
author = {Inês Órfão and Luis Silva and Dinis Girão and etc and Manuel Biscoito and João Canning-Clode and Filipe Ribeiro and Sonia Ferreira},
doi = {10.3391/bir.2025.14.3.13},
year = {2025},
date = {2025-09-08},
urldate = {2025-01-01},
journal = {BioInvasions Records},
volume = {14},
pages = {641-651},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Vasconcelos, Joana; Limburg, Karin; Otero-Ferrer, Jose; Tuset, Víctor
Phenotypic variation in otolith shape of American shad across eastern North American rivers Journal Article
In: Scientific Reports, vol. 15, 2025.
@article{article_57,
title = {Phenotypic variation in otolith shape of American shad across eastern North American rivers},
author = {Joana Vasconcelos and Karin Limburg and Jose Otero-Ferrer and Víctor Tuset},
doi = {10.1038/s41598-025-14742-1},
year = {2025},
date = {2025-08-13},
urldate = {2025-08-13},
journal = {Scientific Reports},
volume = {15},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Alcázar-Treviño, Jesús; Korneliussen, Rolf J.; Escánez, Alejandro; Soto, Natacha Aguilar
Evening choruses in deep waters are associated with mesopelagic diel vertical migrations Journal Article
In: Marine Environmental Research, pp. 107440, 2025, ISSN: 0141-1136.
@article{ALCAZARTREVINO2025107440,
title = {Evening choruses in deep waters are associated with mesopelagic diel vertical migrations},
author = {Jesús Alcázar-Treviño and Rolf J. Korneliussen and Alejandro Escánez and Natacha Aguilar Soto},
url = {https://www.sciencedirect.com/science/article/pii/S0141113625004970},
doi = {https://doi.org/10.1016/j.marenvres.2025.107440},
issn = {0141-1136},
year = {2025},
date = {2025-08-07},
urldate = {2025-08-07},
journal = {Marine Environmental Research},
pages = {107440},
abstract = {Active and passive acoustic observation methods offer an effective approach to studying deep-sea fauna where direct monitoring is particularly challenging. Some of these mesopelagic organisms are part of Deep Scattering Layers (DSLs) which are recognized as being among the largest biomass aggregations of the planet. Current quantitative estimates of this biomass vary by an order of magnitude and it is essential to improve monitoring methods in the face of emerging initiatives to exploit this key ecological resource. In this study, we employ a combination of passive and active acoustic datasets to describe concurrent temporal patterns of DSL migration and changes of the soundscape off two volcanic islands of the subtropical NE Atlantic. We report a chorus centred at 2.5 kHz, matching those previously documented in the Pacific and Indian Oceans, and observed here for the first time in the North Atlantic. This chorus event coincides with the upward migration of organisms from deep scattering layers to surface waters. Furthermore, the maximum received sound levels of this chorus are positively correlated with the measured acoustic backscatter at 38 kHz of the DSL migrating to <150m depth. These results suggest that calibrated Passive Acoustic Monitoring (PAM) measures of chorus intensity could be applied globally as a cost-effective and powerful indicator of migrating organisms from DSLs, potentially reflecting biomass through their associated acoustic backscatter.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ferreira, Rita; Dias, E.; Kaufmann, Manfred; Fernandez, Marc; Alves, Filipe
Revealing trophic interactions among sympatric odontocetes in an oceanic ecosystem through stable isotope analysis Journal Article
In: Journal of Zoology, vol. n/a, no. n/a, 2025.
@article{https://doi.org/10.1111/jzo.70053,
title = {Revealing trophic interactions among sympatric odontocetes in an oceanic ecosystem through stable isotope analysis},
author = {Rita Ferreira and E. Dias and Manfred Kaufmann and Marc Fernandez and Filipe Alves},
url = {https://zslpublications.onlinelibrary.wiley.com/doi/abs/10.1111/jzo.70053},
doi = {https://doi.org/10.1111/jzo.70053},
year = {2025},
date = {2025-07-30},
urldate = {2025-07-30},
journal = {Journal of Zoology},
volume = {n/a},
number = {n/a},
abstract = {Abstract Odontocetes are key predators in marine food webs, but knowledge of their habitat use and trophic niche still needs to be improved. In this study, we used carbon (δ13C) and nitrogen (δ15N) stable isotopes to identify the trophic position, isotopic niche size, foraging habitat, and potential sex-based differences in the dietary patterns of six odontocete species in the Madeira Archipelago: short-beaked common dolphin (Delphinus delphis), Atlantic spotted dolphin (Stenella frontalis), common bottlenose dolphin (Tursiops truncatus), false killer whale (Pseudorca crassidens), short-finned pilot whale (Globicephala macrorhynchus), and sperm whale (Physeter macrocephalus). Results delineated two distinct groups. The first (common dolphin, spotted dolphin, bottlenose dolphin) exhibited lower δ13C and δ15N values, lower trophic positions, and larger isotopic niches, indicating that these species are generalist predators and rely more on the pelagic food web. The second group (false killer whale, short-finned pilot whale, sperm whale) displayed higher isotopic values and trophic positions, with smaller isotopic niches, relying more on shallow-to-deep mix food webs and displaying a more specialist diet. This distinction was further supported by comparisons with stable isotope values of potential prey species. However, for deep-diving species such as short-finned pilot whale and sperm whale, some prey species were not represented in the niche models due to lack of available samples. The isotopic niche overlap was highest for two pairs of species: spotted and bottlenose dolphin, probably related to their generalist diet and temporal co-occurrence; false killer whale and short-finned pilot whale, from which no interspecific competition is expected due to differing habitat preferences. No sex-related differences were found in the five species analyzed for either isotope. This study characterizes the trophic ecology of several oceanic odontocetes in the Eastern North Atlantic and establishes a valuable baseline for future research. Understanding the trophic interactions of these species offers important insights into their ecological roles and the dynamics of the marine ecosystem they inhabit.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Íñiguez, Eva; Montesdeoca-Esponda, Sarah; Alves, Filipe; Sosa-Ferrera, Zoraida; Kaufmann, Manfred; Cordeiro, Nereida; Dinis, Ana
Organic ultraviolet filters in the blubber of two free-ranging deep-diving cetacean species Journal Article
In: Environmental Pollution, vol. 383, pp. 126830, 2025, ISSN: 0269-7491.
@article{INIGUEZ2025126830,
title = {Organic ultraviolet filters in the blubber of two free-ranging deep-diving cetacean species},
author = {Eva Íñiguez and Sarah Montesdeoca-Esponda and Filipe Alves and Zoraida Sosa-Ferrera and Manfred Kaufmann and Nereida Cordeiro and Ana Dinis},
url = {https://www.sciencedirect.com/science/article/pii/S0269749125012035},
doi = {https://doi.org/10.1016/j.envpol.2025.126830},
issn = {0269-7491},
year = {2025},
date = {2025-07-24},
urldate = {2025-01-01},
journal = {Environmental Pollution},
volume = {383},
pages = {126830},
abstract = {The increasing use of personal care products has led to the widespread of organic UV filters (oUVFs) in marine ecosystems, yet their occurrence and potential impacts on pelagic and deep-sea environments remain unclear. This study assessed oUVFs contamination in the blubber of two deep-diving cetacean species —the short-finned pilot whale (Globicephala macrorhynchus) and the sperm whale (Physeter macrocephalus)—off Madeira Island, Eastern North Atlantic. Using microwave-assisted extraction and UHPLC-MS/MS, four of eleven targeted oUVFs were detected in blubber: homosalate, 2-ethylhexyl salicylate, octocrylene, and methylene bis-benzotriazole (UV-360). Concentrations reached up to 352.3 ng/g wet weight (w.w.) in pilot whales and 1505 ng/g w.w. in sperm whales. Detection frequencies were higher in pilot whales (60–100 %) than in sperm whales (30–50 %). This study provides the first evidence of UV-360 concentration in cetaceans. These findings suggest that pilot whales’ higher site fidelity in Madeiran waters may increase exposure to oUVF, while sperm whales may accumulate oUVFs through benthopelagic feeding at higher trophic levels. These results highlight the potential for oUVF to disperse into deep marine ecosystems and underscore the importance of monitoring emerging contaminants in oceanic apex predators.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Klaassen, Moritz; Marques, Tiago A.; Alves, Filipe; Fernandez, Marc
Trends in marine species distribution models: a review of methodological advances and future challenges Journal Article
In: Ecography, vol. n/a, no. n/a, pp. e07702, 2025.
@article{https://doi.org/10.1002/ecog.07702,
title = {Trends in marine species distribution models: a review of methodological advances and future challenges},
author = {Moritz Klaassen and Tiago A. Marques and Filipe Alves and Marc Fernandez},
url = {https://nsojournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecog.07702},
doi = {https://doi.org/10.1002/ecog.07702},
year = {2025},
date = {2025-07-21},
urldate = {2025-07-21},
journal = {Ecography},
volume = {n/a},
number = {n/a},
pages = {e07702},
abstract = {Correlative species distribution models (SDMs) are quantitative tools in biogeography and macroecology. Building upon the ecological niche concept, they correlate environmental covariates to species presence to model habitat suitability and predict species distributions. Since their development, SDMs have undergone substantial advances in their predictive accuracy, benefiting from increased data availability, advanced machine learning algorithms, novel data integration procedures, refined model validation techniques, and incorporation of biotic predictors. Although initially applied in terrestrial systems, these models are now also widely used in the marine environment, recognized for their value in conservation planning, fisheries management, and understanding species responses to climate variability and change. Despite their increased application, SDMs face unique challenges when applied in the marine environment. These challenges include the three-dimensional complexity of marine ecosystems, the availability of environmental covariates across suitable spatial and temporal scales, the dynamic properties of these covariates, and unique dispersal patterns and mobility traits of marine species. Here, we review recent methodological advances and emerging trends in marine SDMs. We highlight three-dimensional modelling approaches that capture species distributions below the sea surface and assess the importance of temporal resolution, particularly for modelling highly mobile marine species in dynamic marine environments. Further, we discuss the expansion in the types of occurrence data being used, including fishery-dependent and fishery-independent sources, citizen science contributions, and satellite tracking data, along with the methods used to address their associated biases. We also explore and discuss novel methodologies for environmental data collection, such as remote-sensing technologies and numeric ocean models, considering the existing limitations in spatial and temporal resolution. Together, our review synthesizes methodological innovations, highlights ongoing challenges, and discusses emerging trends within the extensive literature on marine SDMs.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Freitas, Mafalda; Pinho-Duarte, Filipa; Gaspar, Madalena; etc,; Sousa, Ricardo
A Long-Term Overview of Elasmobranch Fisheries in an Oceanic Archipelago: A Case Study of the Madeira Archipelago Journal Article
In: Fishes, vol. 10, no. 7, 2025, ISSN: 2410-3888.
@article{fishes10070358,
title = {A Long-Term Overview of Elasmobranch Fisheries in an Oceanic Archipelago: A Case Study of the Madeira Archipelago},
author = {Mafalda Freitas and Filipa Pinho-Duarte and Madalena Gaspar and etc and Ricardo Sousa},
url = {https://www.mdpi.com/2410-3888/10/7/358},
doi = {10.3390/fishes10070358},
issn = {2410-3888},
year = {2025},
date = {2025-07-19},
urldate = {2025-01-01},
journal = {Fishes},
volume = {10},
number = {7},
abstract = {Elasmobranch species are considered a global conservation priority due to their susceptibility to fishing pressure. In the Madeira Archipelago, Northeastern Atlantic, most elasmobranch species are caught as bycatch in artisanal drifting longline fishery targeting scabbardfishes. All commercial elasmobranch landings carried out in this archipelago over three decades (1990–2020) were analysed, aiming to provide a reliable overview of Madeira’s elasmobranch fisheries and their evolution. A total of 2316 tonnes of elasmobranchs were landed during the study period, corresponding to approximately EUR 2.1 million in first-sale value. The most representative period occurred from 2003 to 2013, corresponding to 75.21% of the total elasmobranch landings. A general pattern of supply and demand was evident, with mean price values typically showing an inverse trend to landed tonnage. At the species level, Centrophorus squamosus appears as the dominant species, representing about 89% of the total elasmobranch species landed, followed by Prionace glauca, with approximately 3%. The high dominance of C. squamosus in the scabbardfish fishery raises significant ecological and management concerns, as this deep-water shark species is known for its vulnerability to overexploitation. Management measures currently in place need to be updated and ought to be based on studies on the type and size of hooks for each fishery, to ultimately infer about species-specific survival rates, as well as the fishing gears’ soak time. Moreover, studies on the enhancement of food supply through fisheries discards are still missing, even though it is highly likely that this input may alter the dynamics of marine food webs.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Rocha-Lozano, Mónica; Ribagorda-García, Laura; Guerra-González, Noelia; Javier, Elena Jiménez-Soto; Diéguez-Uribeondo,; Medina, Félix Manuel
New evidence of ferret (Mustela putorius furo Linnaeus, 1758) naturalisation on La Palma (Canary Islands): a threat to island biodiversity Journal Article
In: Galemys, vol. 37, no. 13, 2025.
@article{nokey,
title = {New evidence of ferret (Mustela putorius furo Linnaeus, 1758) naturalisation on La Palma (Canary Islands): a threat to island biodiversity},
author = {Mónica Rocha-Lozano and Laura Ribagorda-García and Noelia Guerra-González and Elena Jiménez-Soto Javier and Diéguez-Uribeondo and Félix Manuel Medina},
url = {https://secem.es/index.php/galemys/galemys-37-2025-n3},
doi = {10.7325/Galemys.2025.N3},
year = {2025},
date = {2025-07-19},
urldate = {2025-07-19},
journal = {Galemys},
volume = {37},
number = {13},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Pacheco-Juárez, Javier; Sosa-Ferrera, Zoraida; Guedes-Alonso, Rayco; etc,; Álvarez, Soledad; Pham, Christopher K.
Occurrence and assessment of emerging contaminants adsorbed onto microplastic debris in the Macaronesia region Journal Article
In: Marine Pollution Bulletin, vol. 220, pp. 118447, 2025, ISSN: 0025-326X.
@article{PACHECOJUAREZ2025118447,
title = {Occurrence and assessment of emerging contaminants adsorbed onto microplastic debris in the Macaronesia region},
author = {Javier Pacheco-Juárez and Zoraida Sosa-Ferrera and Rayco Guedes-Alonso and etc and Soledad Álvarez and Christopher K. Pham},
url = {https://www.sciencedirect.com/science/article/pii/S0025326X25009221},
doi = {https://doi.org/10.1016/j.marpolbul.2025.118447},
issn = {0025-326X},
year = {2025},
date = {2025-07-17},
urldate = {2025-01-01},
journal = {Marine Pollution Bulletin},
volume = {220},
pages = {118447},
abstract = {The occurrence and accumulation of microplastics in the aquatic environment has becomes a global problem. These microplastics can adsorb on their superficies other hydrophobic organic chemicals surrounding and act as vectors for the transport of these contaminants and transfer to organisms. This study presents the first coordinated comprehensive three-year spatial-temporal assessment of the occurrence and distribution of emerging contaminants adsorbed on microplastic debris collected from 32 beaches across of Macaronesia (Canary Islands, Madeira, Azores, and Cabo Verde). Two types of microplastic debris (pellets and fragments) were analysed for 34 contaminants using previously established analytical procedures. These included twelve UV filters (UVFs) and UV stabilizers (UVSs) commonly added to personal care products; thirteen steroid hormones and nine pharmaceutical compounds. Concentrations were typically in the nanograms per gram range, obtaining highest concentrations for UV compounds, followed by hormones and, in much lower concentration, pharmaceuticals, possibly due to their hydrophilic nature. The most frequently detected compounds of each family were octocrylene (UVFs), levonorgestrel (hormones) and caffeine (pharmaceuticals) found in 69.12 %, 36.65 % and 29.89 % of the samples, respectively. This study presents a unique multi-archipelago dataset revealing unexpected contamination patterns including significant high concentrations of UV compound even on uninhabited and protected beaches such as Achados Beach (Santa Luzia, Cabo Verde), suggesting the influence of long-range oceanic transport. The findings underscore the ecological risks posed by key pollutants like octocrylene associated with plastics in insular ecosystems. This baseline data is crucial to inform mitigation strategies, including the regulation of UV filters in coastal and marine environments.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Vasconcelos, Joana; Martinez, Javier; Guerra-Marrero, Airam; etc,; Sousa, Ricardo; Hernández-González, Carlos; Freitas, Mafalda; Tuset, Víctor M.
Clarifying species identity in Aphanopus using wavelet-based otolith shape analysis Journal Article
In: PLOS ONE, vol. 20, no. 6, pp. 1-17, 2025.
@article{10.1371/journal.pone.0326199,
title = {Clarifying species identity in Aphanopus using wavelet-based otolith shape analysis},
author = {Joana Vasconcelos and Javier Martinez and Airam Guerra-Marrero and etc and Ricardo Sousa and Carlos Hernández-González and Mafalda Freitas and Víctor M. Tuset},
url = {https://doi.org/10.1371/journal.pone.0326199},
doi = {10.1371/journal.pone.0326199},
year = {2025},
date = {2025-06-18},
urldate = {2025-01-01},
journal = {PLOS ONE},
volume = {20},
number = {6},
pages = {1-17},
publisher = {Public Library of Science},
abstract = {Accurate species identification is crucial for effective fisheries management, particularly for cryptic species with overlapping ranges and similar morphologies. This study explores the coexistence and distribution of Aphanopus carbo and Aphanopus intermedius in the northeastern Atlantic over four decades using otolith contour analysis. Otolith samples were collected from Madeira and the African coast between 1990 and 2021 and analyzed using a wavelet-based method, which improves species discrimination by capturing finer morphological details. The analysis revealed stable species proportions over time, with A. carbo generally dominating the catches (~55–60%), except in 2010 when a decline was observed. A higher presence of A. intermedius in offshore areas may be associated with increased salinity near Madeira Island during the spawning season (October–December). Environmental changes, including variations in temperature and salinity at depths greater than 800 m, and the progressive expansion of the drifting longline fishery to new grounds, likely influenced these patterns. This study demonstrates that combining otolith contour analysis with genetically identified reference specimens enhances species discrimination and provides valuable insights into population dynamics and habitat use. These findings contribute to more effective fisheries management and stock assessments for these economically important scabbardfish in the northeastern Atlantic.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Amaral, Ana Cecília; Andrade, Carlos Alberto Pestana
The Conservation of the Endangered Monachus monachus: Could Maritime Workers Contribute to Its Study? Journal Article
In: Environments, vol. 12, no. 6, 2025, ISSN: 2076-3298.
@article{environments12060207,
title = {The Conservation of the Endangered Monachus monachus: Could Maritime Workers Contribute to Its Study?},
author = {Ana Cecília Amaral and Carlos Alberto Pestana Andrade},
url = {https://www.mdpi.com/2076-3298/12/6/207},
doi = {10.3390/environments12060207},
issn = {2076-3298},
year = {2025},
date = {2025-06-17},
urldate = {2025-01-01},
journal = {Environments},
volume = {12},
number = {6},
abstract = {The interactions between marine predators such as the Mediterranean monk seal (Monachus monachus) and fish farms have raised concerns regarding the potential environmental impacts of the industry on surrounding marine ecosystems. This study investigated the potential role of fish farm workers in monitoring marine biodiversity around aquaculture sites, comparing their potential involvement with that of other maritime workers. Interviews were conducted with maritime workers, including fish farm workers, in order to understand their perceptions of monk seal interactions with fish farms. The author also carried out direct data collection at fish farms to validate these perceptions. The results show a strong alignment between the workers’ perceptions and the data collected by the author on key parameters such as the presence, frequency, and seasonality of monk seals on fish farms. Furthermore, 75% of the 16 fish farm workers interviewed expressed no animosity toward monk seals. This underscores fish farm workers potential for involvement in monitoring initiatives and their understanding of monk seal interactions on fish farms. Given their constant presence at sea and proximity to key interaction zones, maritime workers are well-positioned to monitor environmental pressures and provide valuable data. With appropriate training, these workers could become valuable participants in targeted citizen science efforts, enhancing the public image of the aquaculture industry and advancing research on marine life in the vicinity of aquaculture installations.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Vasconcelos, Joana; Angulo, Pablo; Martínez-Ruiz, Olivia; etc,; Riera, Rodrigo
Adaptive Reproductive Strategies of Limpets in a Harvest-Influenced Environment Journal Article
In: Fisheries Oceanography, vol. n/a, no. n/a, pp. e12745, 2025, (e12745 FOG-24-2044).
@article{https://doi.org/10.1111/fog.12745,
title = {Adaptive Reproductive Strategies of Limpets in a Harvest-Influenced Environment},
author = {Joana Vasconcelos and Pablo Angulo and Olivia Martínez-Ruiz and etc and Rodrigo Riera},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fog.12745},
doi = {https://doi.org/10.1111/fog.12745},
year = {2025},
date = {2025-06-04},
urldate = {2025-06-04},
journal = {Fisheries Oceanography},
volume = {n/a},
number = {n/a},
pages = {e12745},
abstract = {ABSTRACT Limpet harvesting is a size-selective activity that primarily removes the largest individuals, leading to reduced reproductive output. This study investigates the fecundity strategies of two limpet species, Patella aspera and Patella crenata, inhabiting the rocky shores of Gran Canaria. Between September 2023 and April 2024, a total of 288 P. aspera and 364 P. crenata specimens were sampled from four coastal settlements. Both species exhibited determinate fecundity with synchronous spawning, as evidenced by the progression of dominant oocyte cohorts and the corresponding changes in oocyte size and number throughout the spawning season. Orientation and substrate type significantly influenced fecundity, with the North coast showing a higher number of vitellogenic oocytes, particularly in artificial substrates for P. crenata. Natural substrates on the North coast were associated with larger vitellogenic oocytes. Additionally, sex proportions were significantly affected by substrate type, with natural substrates containing a higher proportion of females. In artificial substrates, P. crenata exhibited notably higher gonadosomatic index values. The analysis of the gonadosomatic index and oocyte dynamics highlights the adaptive strategies of these limpets to local environmental conditions, contributing to our understanding of reproductive ecology in intertidal habitats. This research not only enhances our understanding of reproductive dynamics in limpets under varying environmental conditions but also emphasizes the importance of habitat and seasonal factors in shaping fecundity strategies. Such studies are crucial for conservation efforts, as they provide essential insights into how environmental pressures and human activities, like harvesting, impact the reproductive success and sustainability of these commercial species.},
note = {e12745 FOG-24-2044},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Rocha-Lozano, Mónica; Ribagorda-García, Laura; Guerra-González, Noelia; Jiménez-Soto, Elena; Diéguez-Uribeondo, Javier; Medina, Félix Manuel
New evidence of ferret (Mustela putorius furo Linnaeus, 1758) naturalisation on La Palma (Canary Islands): a threat to island biodiversity Journal Article
In: Galemys, vol. 37, 2025, ISSN: 1137-8700.
@article{nokey,
title = {New evidence of ferret (Mustela putorius furo Linnaeus, 1758) naturalisation on La Palma (Canary Islands): a threat to island biodiversity},
author = {Mónica Rocha-Lozano and Laura Ribagorda-García and Noelia Guerra-González and Elena Jiménez-Soto and Javier Diéguez-Uribeondo and Félix Manuel Medina},
doi = {10.7325/Galemys.2025.N3},
issn = {1137-8700},
year = {2025},
date = {2025-06-03},
urldate = {2025-06-03},
journal = {Galemys},
volume = {37},
keywords = {},
pubstate = {published},
tppubtype = {article}
}